| Quality Checks |
| Publisher Version: | IG Publisher Version: v1.3.28 |
| Publication Code: | n/a . PackageId = NCPI-FHIR-Implementation-Guide, Canonical = https://nih-ncpi.github.io/ncpi-fhir-ig |
| Realm Check for n/a: | |
| Publication Request: | - This IG has never been published
- This IG has never been published, so the version should start with '0.' or include a patch version e.g. '-ballot'
- No publication request found
|
| Supressed Messages: | No Suppressed Issues
|
| Dependency Checks: | | Package | Version | FHIR | Canonical | Web Base | Comment |
|---|
  NCPI-FHIR-Implementation-Guide | 0.2.0 | R4 | https://nih-ncpi.github.io/ncpi-fhir-ig | | |
 hl7.terminology.r4 | 5.0.0 O | R4 | http://terminology.hl7.org | http://terminology.hl7.org/5.0.0 | Latest Release is 5.2.0 |
| hl7.fhir.uv.extensions.r4 | 1.0.0 M | R4 | http://hl7.org/fhir/extensions | http://hl7.org/fhir/extensions/1.0.0 | |
 hl7.fhir.us.core | 3.1.1 O | R4 | http://hl7.org/fhir/us/core | http://hl7.org/fhir/us/core/STU3.1.1 | Latest Release is 6.1.0 |
Templates: fhir.base.template#current. Tools: current |
| Dependent IGs: | no references |
| Global Profiles: | (none declared) |
| HTA Analysis: | Non-HL7 Igs are exempt from terminology dependency analysis |
| R5 Dependencies: | (none) |
| Modifier Extensions: | (none) |
| Previous Version Comparison: | Unable to compare with previous version: Unable to find version history at https://nih-ncpi.github.io/ncpi-fhir-ig (Problem #1 with package-list.json at https://nih-ncpi.github.io/ncpi-fhir-ig: Invalid HTTP response 404 from https://nih-ncpi.github.io/ncpi-fhir-ig/package-list.json?nocache=1691522601610 (Not Found) (content in /tmp/http-log/fhir-http-2.log)) |
| IPA Comparison: | n/a |
| Summary: | errors = 34, warn = 65, info = 31, broken links = 4 |
| Path | Severity | Message |
| CodeSystem.where(url = 'http://purl.obolibrary.org/obo/hp.owl') | error | Conformance resource /home/runner/work/ncpi-fhir-ig/ncpi-fhir-ig/fsh-generated/resources/CodeSystem-hpo.json - the canonical URL (https://nih-ncpi.github.io/ncpi-fhir-ig/CodeSystem/hpo) does not match the URL (http://purl.obolibrary.org/obo/hp.owl) |
| CodeSystem | information | CodeSystems SHOULD have a stated value for the caseSensitive element so that users know the status and meaning of the code system clearly |
| CodeSystem | information | Review the All Codes Value Set - incomplete CodeSystems generally should not have an all codes value set specified |
| CodeSystem (l1/c337364) | warning | The ShareableCodeSystem profile says that the caseSensitive element is mandatory, but it is not present. Published code systems SHOULD conform to the ShareableCodeSystem profile |
| fsh-generated/resources/CodeSystem-hpo | error | URL Mismatch https://nih-ncpi.github.io/ncpi-fhir-ig/CodeSystem/hpo vs http://purl.obolibrary.org/obo/hp.owl |
| Path | Severity | Message |
| CodeSystem.where(url = 'https://nih-ncpi.github.io/ncpi-fhir-ig/CodeSystem/ncpi-study-types') | error | Conformance resource /home/runner/work/ncpi-fhir-ig/ncpi-fhir-ig/fsh-generated/resources/CodeSystem-ncpi-study-type.json - the canonical URL (https://nih-ncpi.github.io/ncpi-fhir-ig/CodeSystem/ncpi-study-type) does not match the URL (https://nih-ncpi.github.io/ncpi-fhir-ig/CodeSystem/ncpi-study-types) |
| CodeSystem.url | error | Resource id/url mismatch: ncpi-study-type/https://nih-ncpi.github.io/ncpi-fhir-ig/CodeSystem/ncpi-study-types |
| CodeSystem | information | CodeSystems SHOULD have a stated value for the caseSensitive element so that users know the status and meaning of the code system clearly |
| CodeSystem (l1/c2947) | warning | The ShareableCodeSystem profile says that the caseSensitive element is mandatory, but it is not present. Published code systems SHOULD conform to the ShareableCodeSystem profile |
| fsh-generated/resources/CodeSystem-ncpi-study-type | error | URL Mismatch https://nih-ncpi.github.io/ncpi-fhir-ig/CodeSystem/ncpi-study-type vs https://nih-ncpi.github.io/ncpi-fhir-ig/CodeSystem/ncpi-study-types |
| Path | Severity | Message |
| CodeSystem.where(url = 'http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/tbd-codes') | error | Conformance resource /home/runner/work/ncpi-fhir-ig/ncpi-fhir-ig/fsh-generated/resources/CodeSystem-tbd-codes.json - the canonical URL (https://nih-ncpi.github.io/ncpi-fhir-ig/CodeSystem/tbd-codes) does not match the URL (http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/tbd-codes) |
| CodeSystem | warning | HL7 Defined CodeSystems SHOULD have a stated value for the caseSensitive element so that users know the status and meaning of the code system clearly |
| CodeSystem (l1/c8451) | error | The ShareableCodeSystem profile says that the caseSensitive element is mandatory, but it is not found. HL7 Published code systems SHALL conform to the ShareableCodeSystem profile |
| fsh-generated/resources/CodeSystem-tbd-codes | error | URL Mismatch https://nih-ncpi.github.io/ncpi-fhir-ig/CodeSystem/tbd-codes vs http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/tbd-codes |
| Path | Severity | Message |
| CodeSystem.where(url = 'http://varnomen.hgvs.org') | error | Conformance resource /home/runner/work/ncpi-fhir-ig/ncpi-fhir-ig/fsh-generated/resources/CodeSystem-v3-hgvs.json - the canonical URL (https://nih-ncpi.github.io/ncpi-fhir-ig/CodeSystem/v3-hgvs) does not match the URL (http://varnomen.hgvs.org) |
| CodeSystem | information | CodeSystems SHOULD have a stated value for the caseSensitive element so that users know the status and meaning of the code system clearly |
| CodeSystem (l1/c11769) | warning | The ShareableCodeSystem profile says that the caseSensitive element is mandatory, but it is not present. Published code systems SHOULD conform to the ShareableCodeSystem profile |
| fsh-generated/resources/CodeSystem-v3-hgvs | error | URL Mismatch https://nih-ncpi.github.io/ncpi-fhir-ig/CodeSystem/v3-hgvs vs http://varnomen.hgvs.org |
| Path | Severity | Message |
| ConceptMap.group[0].target (l1/c6791) | warning | Unknown Target Code System https://uts.nlm.nih.gov/uts/umls, so the target codes cannot be checked |
| ConceptMap.group[2].target (l1/c7450) | warning | Target Code System http://purl.obolibrary.org/obo/hp.owl doesn't have all content (content = fragment), so the target codes cannot be checked |
| ConceptMap.group[3].target (l1/c7927) | warning | Target Code System http://purl.obolibrary.org/obo/mondo.owl doesn't have all content (content = fragment), so the target codes cannot be checked |
| ConceptMap (l1/c7929) | warning | The ShareableConceptMap profile says that the title element is mandatory, but it is not present. Published concept maps SHOULD conform to the ShareableConceptMap profile |
| ConceptMap (l1/c7929) | warning | The ShareableConceptMap profile recommends that the name element is populated, but it is not present. Published concept maps SHOULD conform to the ShareableConceptMap profile |
| ConceptMap (l1/c7929) | warning | The ShareableConceptMap profile says that the experimental element is mandatory, but it is not present. Published concept maps SHOULD conform to the ShareableConceptMap profile |
| ConceptMap (l1/c7929) | warning | The ShareableConceptMap profile says that the description element is mandatory, but it is not present. Published concept maps SHOULD conform to the ShareableConceptMap profile |
| Path | Severity | Message |
| Observation.code.coding[0] (l7/c8) | error | Wrong Display Name 'Variable Summary' for https://nih-ncpi.github.io/ncpi-fhir-ig/CodeSystem/ncpi#Summary - should be 'Summary Data' (for the language(s) 'en') for 'https://nih-ncpi.github.io/ncpi-fhir-ig/CodeSystem/ncpi#Summary' |
| Observation.component[0].code.coding[0] (l23/c12) | warning | A code with no system has no defined meaning. A system should be provided |
| Observation.component[1].code.coding[0] (l34/c12) | error | Wrong Display Name 'Number of Samples' for https://nih-ncpi.github.io/ncpi-fhir-ig/CodeSystem/ncpi#SampleCount - should be 'Number of samples that are part of this study' (for the language(s) 'en') for 'https://nih-ncpi.github.io/ncpi-fhir-ig/CodeSystem/ncpi#SampleCount' |
| Observation.component[2].code.coding[0] (l46/c12) | error | Wrong Display Name 'Number of Participants' for https://nih-ncpi.github.io/ncpi-fhir-ig/CodeSystem/ncpi#Participant - should be 'Number of participants that are part of this study' (for the language(s) 'en') for 'https://nih-ncpi.github.io/ncpi-fhir-ig/CodeSystem/ncpi#Participant' |
| Observation.component[3].code.coding[0] (l58/c12) | warning | A code with no system has no defined meaning. A system should be provided |
| Path | Severity | Message |
| Observation.code.coding[0] (l7/c8) | error | Wrong Display Name 'Variable Summary' for https://nih-ncpi.github.io/ncpi-fhir-ig/CodeSystem/ncpi#Summary - should be 'Summary Data' (for the language(s) 'en') for 'https://nih-ncpi.github.io/ncpi-fhir-ig/CodeSystem/ncpi#Summary' |
| Observation.component[0].code.coding[0] (l23/c12) | error | Wrong Display Name 'Number of Samples' for https://nih-ncpi.github.io/ncpi-fhir-ig/CodeSystem/ncpi#SampleCount - should be 'Number of samples that are part of this study' (for the language(s) 'en') for 'https://nih-ncpi.github.io/ncpi-fhir-ig/CodeSystem/ncpi#SampleCount' |
| Observation.component[1].code.coding[0] (l35/c12) | error | Wrong Display Name 'Number of Participants' for https://nih-ncpi.github.io/ncpi-fhir-ig/CodeSystem/ncpi#Participant - should be 'Number of participants that are part of this study' (for the language(s) 'en') for 'https://nih-ncpi.github.io/ncpi-fhir-ig/CodeSystem/ncpi#Participant' |
| Observation.component[2].code.coding[0] (l47/c12) | warning | A code with no system has no defined meaning. A system should be provided |
| Observation.component[3].code.coding[0] (l58/c12) | warning | A code with no system has no defined meaning. A system should be provided |
| Observation.component[4].code.coding[0] (l69/c12) | warning | A code with no system has no defined meaning. A system should be provided |
| Observation.component[5].code.coding[0] (l80/c12) | warning | A code with no system has no defined meaning. A system should be provided |
| Observation.component[6].code.coding[0] (l91/c12) | warning | A code with no system has no defined meaning. A system should be provided |
| Observation.component[7].code.coding[0] (l101/c12) | warning | A code with no system has no defined meaning. A system should be provided |
| Observation.component[8].code.coding[0] (l111/c12) | warning | A code with no system has no defined meaning. A system should be provided |
| Path | Severity | Message |
| Observation.component[0].value.ofType(CodeableConcept).coding[0] (l59/c12) | information | Code System URI 'https://www.ncbi.nlm.nih.gov/gene' is unknown so the code cannot be validated |
| Observation.component[1].value.ofType(CodeableConcept).coding[0] (l79/c12) | information | Code System URI 'http://fhir.ncpi-project-forge.io/ValueSet/loinc-answers' is unknown so the code cannot be validated |
| Observation.component[7].value.ofType(CodeableConcept).coding[0] (l182/c12) | information | The definition for the Code System with URI 'http://www.ncbi.nlm.nih.gov/refseq' doesnt provide any codes so the code cannot be validated |
| Observation.component[8].value.ofType(CodeableConcept).coding[0] (l202/c12) | warning | Error from server: Error parsing HGVS response: Error parsing JSON source: Unexpected char "<" in json stream at Line 0 (path=[]) (see Tx log) |
| Path | Severity | Message |
| StructureDefinition.snapshot.element[17].pattern.ofType(Coding) (l1/c48506) | information | Code System URI 'https://uts.nlm.nih.gov/uts/umls' is unknown so the code cannot be validated |
| StructureDefinition.differential.element[1].pattern.ofType(Coding) (l1/c103432) | information | Code System URI 'https://uts.nlm.nih.gov/uts/umls' is unknown so the code cannot be validated |
| StructureDefinition.snapshot.element[17].pattern.ofType(Coding) | information | The repeating element has a pattern. The pattern will apply to all the repeats (this has not been clear to all users) |
| StructureDefinition.where(url = 'https://nih-ncpi.github.io/ncpi-fhir-ig/StructureDefinition/study-summary') | warning | The Implementation Guide contains no examples for this profile |
| fsh-generated/resources/CodeSystem-ConditionInheritanceMode.json | The ShareableCodeSystem profile says that the experimental element is mandatory, but it is not present. Published code systems SHOULD conform to the ShareableCodeSystem profile |
| fsh-generated/resources/CodeSystem-ConditionInheritanceMode.json | The ShareableCodeSystem profile says that the caseSensitive element is mandatory, but it is not present. Published code systems SHOULD conform to the ShareableCodeSystem profile |
| fsh-generated/resources/CodeSystem-example-study-data-dictionary-dataset-codesystem-1.json | The ShareableCodeSystem profile says that the experimental element is mandatory, but it is not present. Published code systems SHOULD conform to the ShareableCodeSystem profile |
| fsh-generated/resources/CodeSystem-example-study-data-dictionary-dataset-codesystem-1.json | The ShareableCodeSystem profile says that the caseSensitive element is mandatory, but it is not present. Published code systems SHOULD conform to the ShareableCodeSystem profile |
| fsh-generated/resources/CodeSystem-example-study-data-dictionary-datatable-codesystem-1.json | The ShareableCodeSystem profile says that the experimental element is mandatory, but it is not present. Published code systems SHOULD conform to the ShareableCodeSystem profile |
| fsh-generated/resources/CodeSystem-example-study-data-dictionary-datatable-codesystem-1.json | The ShareableCodeSystem profile says that the caseSensitive element is mandatory, but it is not present. Published code systems SHOULD conform to the ShareableCodeSystem profile |
| fsh-generated/resources/CodeSystem-hpo.json | The ShareableCodeSystem profile says that the caseSensitive element is mandatory, but it is not present. Published code systems SHOULD conform to the ShareableCodeSystem profile |
| fsh-generated/resources/CodeSystem-ncpi.json | The ShareableCodeSystem profile says that the caseSensitive element is mandatory, but it is not present. Published code systems SHOULD conform to the ShareableCodeSystem profile |
| fsh-generated/resources/CodeSystem-ncpi-data-types.json | The ShareableCodeSystem profile says that the caseSensitive element is mandatory, but it is not present. Published code systems SHOULD conform to the ShareableCodeSystem profile |
| fsh-generated/resources/CodeSystem-ncpi-study-type.json | The ShareableCodeSystem profile says that the caseSensitive element is mandatory, but it is not present. Published code systems SHOULD conform to the ShareableCodeSystem profile |
| fsh-generated/resources/CodeSystem-nih-consent.json | The ShareableCodeSystem profile says that the experimental element is mandatory, but it is not present. Published code systems SHOULD conform to the ShareableCodeSystem profile |
| fsh-generated/resources/CodeSystem-nih-consent.json | The ShareableCodeSystem profile says that the caseSensitive element is mandatory, but it is not present. Published code systems SHOULD conform to the ShareableCodeSystem profile |
| fsh-generated/resources/CodeSystem-v3-hgvs.json | The ShareableCodeSystem profile says that the caseSensitive element is mandatory, but it is not present. Published code systems SHOULD conform to the ShareableCodeSystem profile |
| fsh-generated/resources/CodeSystem-dbgap-study-design.json | Conformance resource /home/runner/work/ncpi-fhir-ig/ncpi-fhir-ig/fsh-generated/resources/CodeSystem-dbgap-study-design.json - the canonical URL (https://nih-ncpi.github.io/ncpi-fhir-ig/CodeSystem/dbgap-study-design) does not match the URL (https://dbgap-api.ncbi.nlm.nih.gov/fhir/x1/CodeSystem/ResearchStudy-StudyDesign) |
| fsh-generated/resources/CodeSystem-hpo.json | Conformance resource /home/runner/work/ncpi-fhir-ig/ncpi-fhir-ig/fsh-generated/resources/CodeSystem-hpo.json - the canonical URL (https://nih-ncpi.github.io/ncpi-fhir-ig/CodeSystem/hpo) does not match the URL (http://purl.obolibrary.org/obo/hp.owl) |
| fsh-generated/resources/CodeSystem-mondo.json | Conformance resource /home/runner/work/ncpi-fhir-ig/ncpi-fhir-ig/fsh-generated/resources/CodeSystem-mondo.json - the canonical URL (https://nih-ncpi.github.io/ncpi-fhir-ig/CodeSystem/mondo) does not match the URL (http://purl.obolibrary.org/obo/mondo.owl) |
| fsh-generated/resources/CodeSystem-ncit.json | Conformance resource /home/runner/work/ncpi-fhir-ig/ncpi-fhir-ig/fsh-generated/resources/CodeSystem-ncit.json - the canonical URL (https://nih-ncpi.github.io/ncpi-fhir-ig/CodeSystem/ncit) does not match the URL (http://purl.obolibrary.org/obo/ncit.owl) |
| fsh-generated/resources/CodeSystem-ncpi-study-type.json | Conformance resource /home/runner/work/ncpi-fhir-ig/ncpi-fhir-ig/fsh-generated/resources/CodeSystem-ncpi-study-type.json - the canonical URL (https://nih-ncpi.github.io/ncpi-fhir-ig/CodeSystem/ncpi-study-type) does not match the URL (https://nih-ncpi.github.io/ncpi-fhir-ig/CodeSystem/ncpi-study-types) |
| fsh-generated/resources/CodeSystem-omim.json | Conformance resource /home/runner/work/ncpi-fhir-ig/ncpi-fhir-ig/fsh-generated/resources/CodeSystem-omim.json - the canonical URL (https://nih-ncpi.github.io/ncpi-fhir-ig/CodeSystem/omim) does not match the URL (https://omim.org/) |
| fsh-generated/resources/CodeSystem-tbd-codes.json | Conformance resource /home/runner/work/ncpi-fhir-ig/ncpi-fhir-ig/fsh-generated/resources/CodeSystem-tbd-codes.json - the canonical URL (https://nih-ncpi.github.io/ncpi-fhir-ig/CodeSystem/tbd-codes) does not match the URL (http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/tbd-codes) |
| fsh-generated/resources/CodeSystem-v3-hgvs.json | Conformance resource /home/runner/work/ncpi-fhir-ig/ncpi-fhir-ig/fsh-generated/resources/CodeSystem-v3-hgvs.json - the canonical URL (https://nih-ncpi.github.io/ncpi-fhir-ig/CodeSystem/v3-hgvs) does not match the URL (http://varnomen.hgvs.org) |
| fsh-generated/resources/ValueSet-tbd-codes.json | Conformance resource /home/runner/work/ncpi-fhir-ig/ncpi-fhir-ig/fsh-generated/resources/ValueSet-tbd-codes.json - the canonical URL (https://nih-ncpi.github.io/ncpi-fhir-ig/ValueSet/tbd-codes) does not match the URL (http://hl7.org/fhir/uv/genomics-reporting/ValueSet/tbd-codes) |
| fsh-generated/resources/Condition-disease-example-1.json | Unknown Code 'NCIT:Neuroblastoma' in the system 'http://purl.obolibrary.org/obo/ncit.owl' - note that the code system is labeled as a fragment, so the code may be valid in some other fragment for 'http://purl.obolibrary.org/obo/ncit.owl#NCIT:Neuroblastoma' |
| fsh-generated/resources/Observation-anvil-summary-cmg.json | Wrong Display Name 'Variable Summary' for https://nih-ncpi.github.io/ncpi-fhir-ig/CodeSystem/ncpi#Summary - should be 'Summary Data' (for the language(s) 'en') for 'https://nih-ncpi.github.io/ncpi-fhir-ig/CodeSystem/ncpi#Summary' |
| fsh-generated/resources/Observation-anvil-summary-cmg.json | Wrong Display Name 'Number of Samples' for https://nih-ncpi.github.io/ncpi-fhir-ig/CodeSystem/ncpi#SampleCount - should be 'Number of samples that are part of this study' (for the language(s) 'en') for 'https://nih-ncpi.github.io/ncpi-fhir-ig/CodeSystem/ncpi#SampleCount' |
| fsh-generated/resources/Observation-anvil-summary-cmg.json | Wrong Display Name 'Number of Participants' for https://nih-ncpi.github.io/ncpi-fhir-ig/CodeSystem/ncpi#Participant - should be 'Number of participants that are part of this study' (for the language(s) 'en') for 'https://nih-ncpi.github.io/ncpi-fhir-ig/CodeSystem/ncpi#Participant' |
| fsh-generated/resources/Observation-anvil-summary-phs000711.json | Wrong Display Name 'Variable Summary' for https://nih-ncpi.github.io/ncpi-fhir-ig/CodeSystem/ncpi#Summary - should be 'Summary Data' (for the language(s) 'en') for 'https://nih-ncpi.github.io/ncpi-fhir-ig/CodeSystem/ncpi#Summary' |
| fsh-generated/resources/Observation-anvil-summary-phs000711.json | Wrong Display Name 'Number of Samples' for https://nih-ncpi.github.io/ncpi-fhir-ig/CodeSystem/ncpi#SampleCount - should be 'Number of samples that are part of this study' (for the language(s) 'en') for 'https://nih-ncpi.github.io/ncpi-fhir-ig/CodeSystem/ncpi#SampleCount' |
| fsh-generated/resources/Observation-anvil-summary-phs000711.json | Wrong Display Name 'Number of Participants' for https://nih-ncpi.github.io/ncpi-fhir-ig/CodeSystem/ncpi#Participant - should be 'Number of participants that are part of this study' (for the language(s) 'en') for 'https://nih-ncpi.github.io/ncpi-fhir-ig/CodeSystem/ncpi#Participant' |
| fsh-generated/resources/Specimen-ncpi-research-study-01-specimen-01.json | Unknown Code 'C17610' in the system 'http://purl.obolibrary.org/obo/ncit.owl' - note that the code system is labeled as a fragment, so the code may be valid in some other fragment for 'http://purl.obolibrary.org/obo/ncit.owl#C17610' |